# 23 October 2013
# graph description for the Kim-O'Shea graph from
# Kim, O'Shea, "A quantitative model of transcription factor-activated gene expression", Nat. Struct. Mol. Biol., 15:1192-8 2008
# as described in Figure 4B of 
# Ahsendorf, Wong, Eils, Gunawardena, "A framework for modelling gene regulation that accommodates non-equilibrium mechanisms", submitted, 2013.
#
# from Figure 4B, the edge labels are encoded as 
# a = kassoc, b = kexpdissoc, c = knucdissoc, d = kremod, e = kreass
#

(11,a,10) (6,a,5) (1,a,4) (6,a,1) (5,a,4) (2,a,3) (7,a,8) (12,a,9) (7,a,2) (8,a,3)

(10,b,11) (5,b,6) (4,b,1) (3,b,2) (8,b,7) (9,b,12)

(1,c,6) (2,c,7) (4,c,5) (3,c,8)

(1,d,2) (4,d,3) (5,d,8) (10,d,5) (9,d,8)

(12,e,11) (7,e,6) (6,e,11) (7,e,12) (2,e,1) (3,e,4) (8,e,5) (9,e,10) (8,e,9) (5,e,10)

